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Xenopus tropicalis Genome Browser
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About Xenopus Ensembl

Bwarp! The Xenopus tropicalis genome assembly 3.0 [details] is the third of a series of preliminary assembly releases by the JGI that are planned as part of the ongoing X. tropicalis genome project. The current assembly includes approximately 7X in small insert end-sequence coverage. This Ensembl website presents the sequence data provided by the JGI.

The assembly was constructed with the JGI assembler, Jazz, using paired end sequencing reads. After trimming for vector and quality, 19.1 Million reads assembled into 27,064 scaffolds totaling 1.63 Gbp. Roughly half of the genome is contained in 392 scaffolds all at least 1.2 Mb in length.
Current Release 31.1a
Last Update:  27-01-2005
Ensembl gene predictions:  24405
Genscan gene predictions:  70441
Ensembl gene exons:  294746
Ensembl gene transcripts:  52786
Scaffolds:  27064
Base Pairs:  1630713514
Golden Path Length:  1630713514
Ensembl What's new
Example data points

This release of X.tropicalis data is assembled into scaffolds, so there are no chromosomes available to browse. Use the BLAST and SSAHA buttons in the Entry Points section above to locate data.

A few example data points :
o   Scaffold: Scaffold_1
o   Scaffold: Scaffold_20
o   Scaffold: Scaffold_40
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