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| Tetraodon Genome Project |
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The Tetraodon genome project is a collaboration between Genoscope and the Broad Institute (MIT). This Ensembl website presents
sequence data and analyses provided by the two institutes.
The project was supported by the Consortium National de Recherche en
Genomique and the National Human Genome Research Institute.
The genome assembly was performed using Arachne (Jaffe D.B. et. al.
2003. Gen. Res. 13, 91-96). This site
presents version 7 of the assembly.
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| Annotation |
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Genes were annotated by Genoscope,
combining evidence from Geneid,
Genscan, Genewise and Exofish predictions with alignments of Tetraodon
cDNAs to the genome. This was done automatically using GAZE (Howe K.,
Chothia T. and Durbin R. 2002. Gen. Res. 12, 1418-27) with a
custom-designed configuration and gene structure model..
The annotation also includes 87 manually curated structures of a number of
HOX and Cytokine genes.
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| Current Release 31.1c |
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Last Update:
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02-09-2004
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Genoscope predicted genes:
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27918
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Genoscope predicted transcripts:
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27918
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Genoscope predicted exons:
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196884
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Genoscope curated genes:
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86
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Genoscope curated transcripts:
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86
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Genoscope curated exons:
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421
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Chromosomes:
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21
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UltraContigs:
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128
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Ultracontigs mapped to chr: |
39 |
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Scaffolds:
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25773
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Base Pairs:
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402240326
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Golden Path Length:
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342351780
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| Documentation & Help |
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| About Ensembl |
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For context-sensitive help
on any web page click |
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| Questions or suggestions? Try |
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Documentation (includes tutorial on direct data access & instructions for installing Ensembl on your own site)
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| Ensembl Links and Site Map |
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